Thursdays in 901 Van Vleck Hall at 2:25 PM, unless otherwise noted. If you would like to receive announcements about upcoming seminars, please visit this page to sign up for the email list.
Thursday, January 31, Bret Larget, UW-Madison
Title: Approximate conditional independence of separated subtrees and phylogenetic inference
Abstract: Bayesian methods to reconstruct evolutionary trees from aligned DNA sequence data from different species depend on Markov chain Monte Carlo sampling of phylogenetic trees from a posterior distribution. The probabilities of tree topologies are typically estimated with the simple relative frequencies of the trees in the sample. When the posterior distribution is spread thinly over a very large number of trees, the simple relative frequencies from finite samples are often inaccurate estimates of the posterior probabilities for many trees. We present a new method for estimating the posterior distribution on the space of trees from samples based on the approximation of conditional independence between subtrees given their separation by an edge in the tree. This approximation procedure effectively spreads the estimated posterior distribution from the sampled trees to the larger set of trees that contain clades (sets of species in subtrees) that have been sampled, even if the full tree is not part of the sample. The approximation is shown to be accurate for many data sets and is theoretically justified. We also explore a consequence of this result that may lead to substantial increases in computational efficiency for sampling trees from posterior distributions. Finally, we present an open problem to compare rates of convergence between the simple relative frequency approach and the approximation approach.
Thursday, February 14, Jean-Luc Thiffeault, UW-Madison
Title: Biomixing and large deviations
Abstract: As fish, micro-organisms, or other bodies move through a fluid, they stir their surroundings. This can be beneficial to some fish, since the plankton they eat depends on a well-stirred medium to feed on nutrients. Bacterial colonies also stir their environment, and this is even more crucial for them since at small scales there is no turbulence to help mixing. I will discuss a simple model of the stirring action of moving bodies through a fluid. An attempt will be made to explain existing data on the displacements of small particles, which exhibits probability densities with exponential tails. A large-deviation approach helps to explain some of the data, but mysteries remain.
Tuesday, March 5, 2:30pm VV B341, Janosch Ortmann, University of Toronto
Title: Product-form Invariant Measures for Brownian Motion with Drift Satisfying a Skew-symmetry Type Condition
Abstract: Motivated by recent developments on positive-temperature polymer models we propose a generalisation of reflected Brownian motion (RBM) in a polyhedral domain. Our process is obtained by replacing the singular drift on the boundary by a continuous one which depends, via a potential U, on the position of the process relative to the domain. We show that our generalised process has an invariant measure in product form, under a certain skew-symmetry condition that is independent of the choice of potential. Applications include TASEP-like particle systems, generalisations of Brownian motion with rank-dependent drift and diffusions connected to the generalised Pitman transform.
Thursday, March 14, Brian Rider, Temple University
Thursday, March 21, Neil O'Connell, University of Warwick
Thursday, April 11, Kevin Lin University of Arizona
Thursday, April 25, Fraydoun Rezakhanlou, UC - Berkeley
Wednesday, May 1, Bálint Vető, University of Bonn