Me
Photo: Sylvain Crouzet


I am a Professor in the Department of Mathematics at the University of Wisconsin-Madison, where I am affiliated with the Probability Group and the Applied Mathematics Group. I am also involved with the Institute for Foundations of Data Science (IFDS). My CV can be found here.

I work at the intersection of applied probability, statistics and theoretical computer science, with an emphasis on biological applications. More details on my research interests and publications can be found here. My work is currently supported by NSF grants DMS-1149312 (CAREER), DMS-1614242 and CCF-1740707 (TRIPODS).

I am an associate editor for the Annals of Applied Probability. Submit a paper here.


News

Apr 2018: TRIPODS Summer School on Fundamentals of Data Analysis - The Institute for Foundations of Data Science at UW-Madison, in collaboration with the NSF TRIPODS Institutes at the University of Washington and at the University of California-Berkeley, is organizing a summer school on July 24-28, 2018 in Madison. Apply by April 20 here.

Mar 2018: I am grateful to the Simons Foundation for supporting my upcoming sabbatical (2018-2019) through a Simons Fellowship.

Jan 2018: My paper with Mike Steel on "Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent" received Honorable Mention in the 2018 Marcus W. Feldman Prize in Theoretical Population Biology.

Nov 2017: The website of the Institute for Foundations of Data Science (IFDS) is now available here.

Aug 2017: Our new Institute for Foundations of Data Science has been funded through the NSF TRIPODS and NSF Growing Convergence Research programs. More details here and here.

May 2017: My Ph.D. student Kun-Chieh (Jason) Wang successfully defended his thesis.


Currently Teaching

Spring 2018: MATH 734 - Theory of Probability II


Lecture notes

A graduate course in modern discrete probability

A topics course on stochastic processes in evolutionary genetics

The first semester of graduate probability theory


Recent Preprints (full list here)

Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods
Preprint, 2018. With Sebastien Roch and Michael Nute and Tandy Warnow.
Book review of "Phylogeny-Discrete and random processes in evolution by Mike Steel"
To appear in Bulletin of the AMS, 2018.
Geometry of the sample frequency spectrum and the perils of demographic inference
Preprint, 2017. With Zvi Rosen, Anand Bhaskar, Yun S. Song.
Generalized least squares can overcome the critical threshold in respondent-driven sampling
Preprint, 2017. With Karl Rohe.
Critical threshold for ancestral reconstruction by maximum parsimony on general phylogenies
Preprint, 2017. With Jason Wang.
Coalescent-based species tree estimation: a stochastic Farris transform
Preprint, 2017. With Gautam Dasarathy, Elchanan Mossel, Robert Nowak.
Efficient and consistent inference of ancestral sequences in an evolutionary model with insertions and deletions under dense taxon sampling
Preprint, 2017. With L. Fan.
Necessary and sufficient conditions for consistent root reconstruction in Markov models on trees
Preprint, 2017. With L. Fan.
Circular Networks from Distorted Metrics
To appear in RECOMB 2018. With J. Wang.
Species tree estimation using ASTRAL: how many genes are enough?
To appear in IEEE TCBB, 2017. With S. Shekhar and S. Mirarab.
Conference abstract in Proceedings of RECOMB 2017, 393-395.
Species trees are recoverable from unrooted gene tree topologies under a constant rate of horizontal gene transfer
Preprint, 2017. With C. Daskalakis.

A full list of publications is available here.


Contact Information

Office: Van Vleck 823
Phone: 608-263-3053
Fax: 608-263-8891
lastname[at]math[dot]wisc[dot]edu
Department of Mathematics
University of Wisconsin-Madison
480 Lincoln Drive
Madison, WI 53706
last modified: apr 17, 2018