Difference between revisions of "Probability Seminar"

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Over time, genes can duplicate or be lost. The history of a gene family is a tree whose nodes represent duplications, speciations, or losses. A birth-and-death process is used to model this gene family tree, embedded within a species tree. I will present this phylogenetic version of the birth and death tree process, along with a probability model for whole-genome duplications. If there is interest and time, I will talk about learning birth and death rates and detecting ancient whole-genome duplications from genomic data.
 
Over time, genes can duplicate or be lost. The history of a gene family is a tree whose nodes represent duplications, speciations, or losses. A birth-and-death process is used to model this gene family tree, embedded within a species tree. I will present this phylogenetic version of the birth and death tree process, along with a probability model for whole-genome duplications. If there is interest and time, I will talk about learning birth and death rates and detecting ancient whole-genome duplications from genomic data.
  
 
<!--== Thursday, April 3, TBA ==-->
 
  
 
== Thursday, April 10, [https://www.math.ucdavis.edu/~romik/home/Dan_Romik_home.html Dan Romik] UC-Davis ==
 
== Thursday, April 10, [https://www.math.ucdavis.edu/~romik/home/Dan_Romik_home.html Dan Romik] UC-Davis ==

Revision as of 15:38, 16 June 2014


Fall 2014

Thursdays in 901 Van Vleck Hall at 2:25 PM, unless otherwise noted.

If you would like to sign up for the email list to receive seminar announcements then please send an email to Probsem.jpg

Thursday, May 1, Antonio Auffinger U Chicago

Title: Strict Convexity of the Parisi Functional

Spin glasses are magnetic systems exhibiting both quenched disorder and frustration, and have often been cited as examples of "complex systems." As mathematical objects, they provide several fascinating structures and conjectures. This talk will cover recent progress that shed more light in the mysterious and beautiful solution proposed 30 years ago by G. Parisi. We will focus on properties of the free energy of the famous famous Sherrington-Kirkpatrick model and we will explain a recent proof of the strict convexity of the Parisi functional. Based on a joint work with Wei-Kuo Chen.

Thursday, May 8, Steve Goldstein, WID

Title: Modeling patterns of DNA sequence diversity with Cox Processes

Abstract: Events in the evolutionary history of a population can leave subtle signals in the patterns of diversity of its DNA sequences. Identifying those signals from the DNA sequences of present-day populations and using them to make inferences about selection is a well-studied and challenging problem.

Next generation sequencing provides an opportunity for making inroads on that problem. In this talk, I will present a novel model for the analysis of sequence diversity data and use the model to motivate analyses of whole-genome sequences from 11 strains of Drosophila pseudoobscura.

The model treats the polymorphic sites along the genome as a realization of a Cox Process, a point process with a random intensity. Within the context of this model, the underlying problem translates to making inferences about the distribution of the intensity function, given the sequence data.

We give a proof of principle, showing that even a simplistic application of the model can quantify differences in diversity between regions with varying recombination rates. We also suggest a number of directions for applying and extending the model. -->


Past Seminars